Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs12597299 chr16:89822364 C/A 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs12597862 chr16:25666094 T/C 2.16E-8 175 25.6 25.87 8.12 KM Plot
PCPG rs12597950 chr16:1669339 A/G 1.52E-11 173 24.85 30.93 4.52 KM Plot
PCPG rs12598214 chr16:89841424 C/T 0.000181 176 25.87 20.2 36.37 KM Plot
PCPG rs12598276 chr16:89829196 G/C 0.000167 177 25.87 20.17 36.37 KM Plot
PCPG rs12598316 chr16:89916600 C/A 1.11E-16 171 25.87 23.37 3.17 KM Plot
PCPG rs12598737 chr16:89920957 A/G 0.000185 172 25.87 23.37 36.37 KM Plot
PCPG rs12599002 chr16:89817569 G/A 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs12599473 chr16:89827435 A/C 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs12599561 chr16:89894358 C/G 0.000192 173 25.87 21.5 36.37 KM Plot
PCPG rs12599644 chr16:1959185 C/T 1.47E-5 173 25.6 24.1 13.23 KM Plot
PCPG rs12599846 chr16:89818908 C/T 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs12600047 chr16:89831630 G/A 0.000177 174 26.57 20.2 36.37 KM Plot
PCPG rs12600051 chr16:89992072 G/T 1.11E-16 171 25.87 20.28 3.17 KM Plot
PCPG rs12600151 chr16:89831558 C/T 0.000167 177 25.87 20.17 36.37 KM Plot